RNAJunction Database - Junction Profile:12460
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 12460: 2OTJ_j7_0-A912_0-G928_0-U1041_0-C1069_0-A1086_0-C1267_0-A1286

Primary Citation: (from PDB entry 2OTJ)

G.BLAHA S.J.SCHROEDER J.TIRADO-RIVES THE STRUCTURES OF ANTIBIOTICS BOUND TO THE E SITE REGION OF THE 50 S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI: 13-DEOXYTEDANOLIDE AND GIRODAZOLE. J.MOL.BIOL. V. 367 1471 2007

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:7-wayCluster:1KC8 j7 A-A912 A-G928 A-U1041 A-C1069 A-A1086 A-C1267 A-A1286 
NC-IUBMB Classification:Cluster Page
Angles: 31:39:41:41:62:64:65:77:92:100:101:103:119:126:131:131:134:140:141:158:164°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.5952Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: AUGACC 6nt

Strand 2: Chain 0: CGAAACAU 8nt

Strand 3: Chain 0: GAUUCCGGU 9nt

Strand 4: Chain 0: ACCAGGAGG 9nt

Strand 5: Chain 0: CCAGAGAU 8nt

Strand 6: Chain 0: GUCCGUAC 8nt

Strand 7: Chain 0: GUAAUCGAGUAG 12nt

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