############# Start of Description of junction: j2 # Number of strands: NUM_STRANDS = 2 LILLEY = HS1HS2 FINGERPRINT = 155 LOOP_LENGTH_SUM = 3 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 12 S1_NAME_ID3 = 19 S1_NUM_ID5_ORIG = 12 S1_NUM_ID3_ORIG = 19 S1_NAME2_ID5 = 14 S1_NAME2_ID3 = 17 S1_NUM2_ID5_ORIG = 14 S1_NUM2_ID3_ORIG = 17 S1_SQ2 = GAAG S1_SQLEN2 = 4 S1_SQ = GUGAAGUC S1_SQLEN = 8 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 24 S2_NAME_ID3 = 30 S2_NUM_ID5_ORIG = 24 S2_NUM_ID3_ORIG = 30 S2_NAME2_ID5 = 26 S2_NAME2_ID3 = 28 S2_NUM2_ID5_ORIG = 26 S2_NUM2_ID3_ORIG = 28 S2_SQ2 = CAC S2_SQLEN2 = 3 S2_SQ = GUCACAC S2_SQLEN = 7 S2_CHAR = B ## Properties of helix 1 H1_INID = 1 H1_OUTID = 7 H1_INID2 = 3 H1_OUTID2 = 5 H1_INID2_ORIG = 14 H1_OUTID2_ORIG = 28 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = B # Position: H1_P_X = 34.591549759843126 H1_P_Y = 17.382616442228105 H1_P_Z = 0.553944545686835 # Orientation: H1_DX_X = 0.2717266806027112 H1_DX_Y = -0.1696059308749085 H1_DX_Z = 0.9473111628502484 H1_DY_X = -0.7008788144192479 H1_DY_Y = -0.7094288382316236 H1_DY_Z = 0.07402439451693699 H1_DZ_X = 0.6594948813652053 H1_DZ_Y = -0.6840647277103109 H1_DZ_Z = -0.31164394708659643 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 8 H2_INID2 = 3 H2_OUTID2 = 6 H2_INID2_ORIG = 26 H2_OUTID2_ORIG = 17 H2_INSEQ_CHAR = B H2_OUTSEQ_CHAR = A # Position: H2_P_X = 20.23803743341618 H2_P_Y = 33.192364448329094 H2_P_Z = 3.447914701739397 # Orientation: H2_DX_X = 0.7047846087490015 H2_DX_Y = 0.5061428862281119 H2_DX_Z = -0.497089563349705 H2_DY_X = -0.32635301323763954 H2_DY_Y = -0.3908348949391893 H2_DY_Z = -0.8606635786697288 H2_DZ_X = -0.6298986950464567 H2_DZ_Y = 0.7688091204054146 H2_DZ_Z = -0.1102731624658344 ############# END of Description of junction: j2