RNAJunction Database - Junction Profile:4238
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4238: 1NYI_j3_A-C16_B-A107_B-U119

Primary Citation: (from PDB entry 1NYI)

C.M.DUNHAM J.B.MURRAY W.G.SCOTT A HELICAL TWIST-INDUCED CONFORMATIONAL SWITCH ACTIVATES CLEAVAGE IN THE HAMMERHEAD RIBOZYME. J.MOL.BIOL. V. 332 327 2003

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:3-wayCluster:1NYI j3 A-C16 B-A107 B-U119 
NC-IUBMB Classification:Cluster Page
Angles: 41:148:163°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.89569Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GUCUGAUGA 9nt

Strand 2: Chain B: AGUCAC 6nt

Strand 3: Chain B: GAAACU 6nt

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